• Protein Structure Prediction
• Chemical Shift Prediction
• Cryo-EM Fit
• Contact Prediction
• Cryo-EM Guided Protein Fold Elucidation
• Jufo9D Secondary Structure and TM Span Prediction
• BCL::Cluster: Clustering biological molecules with PyMOL visualization
• BCL::EMFitMinimize

Lindert, S.;Staritzbichler, R.; Woetzel, N.; Karakas, M.; Stewart, P. L.; Meiler, J.
EM-fold: De novo folding of alpha-helical proteins guided by intermediate-resolution electron microscopy density maps (2009) Structure

Karakas, M.;Woetzel, N.; Meiler, J.
BCL::contact-low confidence fold recognition hits boost protein contact prediction and de novo structure determination (2010) J. Comput. Biol.

Durham, E.;Dorr, B., Woetzel, N., Staritzbichler, R., Meiler, J.
Solvent accessible surface area approximations for rapid and accurate protein structure prediction (2009) J. Mol. Model.

Nils Woetzel;Steffen Lindert, Phoebe L. Stewart, Jens Meiler
BCL::EM-Fit: Rigid body fitting of atomic structures into density maps using geometric hashing and real space refinement (2011) Journal of Structural Biology

Nathan Alexander;Nils Woetzel, Jens Meiler
Bcl::Cluster: A method for clustering biological molecules coupled with visualization in the Pymol Molecular Graphics System (2011) IEEE Conference

Edward W. Lowe;Nils Woetzel, Jens Meiler
Poster: GPU-accelerated artificial neural network for QSAR modeling (2011) IEEE Conference

Nils Woetzel;Edward W. Lowe, Jens Meiler
Poster: GPU-accelerated rigid body fitting of atomic structures into electron density maps (2011) IEEE Conference

Julia Koehler;Nils Woetzel, Rene Staritzbichler, Charles R. Sanders, and Jens Meiler
A unified hydrophobicity scale for multispan membrane proteins (2009) Proteins

Steffen Lindert;Tommy Hofman, Nils Woetzel, Mert Karakas, Phoebe L. Stewart, Jens Meiler
Ab initio protein modeling into cryoEM density maps using EM-Fold (2012) Biopolymers

Steffen Lindert;Nathan Alexander, Nils Woetzel, Mert Karakas, Phoebe L. Stewart, Jens Meiler
EM-Fold: De Novo Atomic-Detail Protein Structure Determination from Medium-Resolution Density Maps (2012) Structure